STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO18338.1Peptide/nickel transport system substrate-binding protein. (549 aa)    
Predicted Functional Partners:
SEO28337.1
Peptide/nickel transport system permease protein.
  
  0.864
SEO28364.1
Peptide/nickel transport system permease protein.
 
 
 0.817
SEO28390.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
  0.816
SEO93351.1
Trimethylamine---corrinoid protein Co-methyltransferase; Belongs to the trimethylamine methyltransferase family.
  
     0.702
SEO93084.1
Fatty acid desaturase.
  
     0.684
SEO35814.1
Sarcosine oxidase subunit gamma.
  
     0.625
SEO73053.1
Peptide/nickel transport system permease protein.
 
  0.565
SEO24636.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.526
SEO73030.1
Peptide/nickel transport system permease protein.
 
  0.526
SEO17410.1
Peptide/nickel transport system permease protein.
  
  0.524
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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