STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO14415.1ABC-2 type transport system permease protein. (236 aa)    
Predicted Functional Partners:
SEP19626.1
ABC transporter.
  
 
  0.610
SEO14384.1
Transposase.
       0.526
SEO77828.1
ABC-2 type transport system ATP-binding protein.
 
  0.517
SEO14436.1
Outer membrane protein OmpA.
       0.495
SEP09069.1
Capsular polysaccharide transport system permease protein.
    
  0.478
SEO77806.1
ABC-2 type transport system permease protein.
  
  
  0.458
SEO20161.1
Glycine betaine/proline transport system substrate-binding protein.
  
  
  0.444
SEO68283.1
Lipopolysaccharide export system permease protein.
  
  
  0.433
SEO86388.1
ABC-2 type transport system ATP-binding protein.
 
 
  0.432
SEO54693.1
Nitroreductase.
  
    0.428
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.