STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO15992.1Hypothetical protein. (432 aa)    
Predicted Functional Partners:
SEO15907.1
Hypothetical protein.
 
   
 0.856
SEO15940.1
Hypothetical protein.
 
     0.787
SEO15967.1
Response regulator receiver domain-containing protein.
 
     0.775
SEO16022.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
 
     0.694
SEO63001.1
Phasin protein.
  
     0.694
SEO15876.1
Flagellar motor switch protein FliM.
 
     0.612
SEO25757.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.606
SEO02221.1
Putative peptidoglycan binding domain-containing protein.
  
     0.515
SEO95473.1
Predicted Peptidoglycan domain-containing protein.
  
     0.514
SEO53477.1
Sporulation related domain-containing protein.
  
     0.498
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.