STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO17007.1TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (355 aa)    
Predicted Functional Partners:
SEO17034.1
TRAP transporter, DctM subunit.
 
    0.915
SEO17047.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.914
SEO38730.1
TRAP transporter, DctM subunit.
 
    0.780
SEO64075.1
TRAP transporter, DctM subunit.
 
    0.780
SEO64098.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.779
SEP24470.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.779
SEP24482.1
TRAP transporter, DctM subunit.
 
    0.779
SEO78542.1
TRAP transporter, DctM subunit.
 
    0.660
SEO78564.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.652
SEO38760.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.611
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.