STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO29229.1Predicted dithiol-disulfide isomerase, DsbA family. (213 aa)    
Predicted Functional Partners:
SEO18411.1
Arsenate reductase.
   
   0.879
SEO62691.1
Arsenate reductase; Belongs to the ArsC family.
   
   0.879
SEO29210.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
       0.821
SEO29251.1
Ion channel.
   
   0.809
SEO29275.1
MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein.
   
   0.799
SEO29190.1
Transcriptional regulator, contains XRE-family HTH domain.
       0.648
SEO29297.1
Hypothetical protein.
  
    0.576
SEO70869.1
NAD(P)H-dependent FMN reductase.
 
    0.512
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.