STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO30536.1Hypothetical protein. (88 aa)    
Predicted Functional Partners:
SEO30497.1
Cytochrome c-type biogenesis protein CcmH.
 
   
 0.887
SEO30517.1
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.856
SEO52948.1
Hypothetical protein.
  
     0.699
SEO56652.1
Predicted secreted protein.
  
     0.610
SEO30476.1
Sarcosine oxidase subunit beta.
       0.509
SEO93123.1
Hypothetical protein.
 
     0.490
SEO18362.1
Uncharacterized conserved protein, DUF952 family.
  
     0.473
SEO63621.1
Protein of unknown function.
  
     0.441
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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