STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO37277.1Predicted amidohydrolase. (259 aa)    
Predicted Functional Partners:
SEO35939.1
Glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.876
SEP08308.1
Aldehyde dehydrogenase (NAD+).
   
  0.852
SEO59726.1
Glutamate synthase (NADPH) large subunit.
    
  0.846
SEO63478.1
Nitrile hydratase.
     
 0.840
SEO86817.1
4-hydroxyphenylpyruvate dioxygenase.
   
  0.834
SEO37107.1
Agmatinase; Belongs to the arginase family.
  
 
  0.830
SEO86462.1
NAD-dependent formate dehydrogenase catalytic subunit /NAD-dependent formate dehydrogenase iron-sulfur protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
  0.823
SEP15320.1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
  
  
  0.819
SEO37225.1
Putative spermidine/putrescine transport system permease protein.
 
     0.811
SEO37159.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.806
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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