Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEO37687.1 | SEO37758.1 | SAMN04490248_104165 | SAMN04490248_104167 | TRAP-type C4-dicarboxylate transport system, substrate-binding protein. | N-terminal half of MaoC dehydratase. | 0.902 |
SEO37687.1 | SEO37786.1 | SAMN04490248_104165 | SAMN04490248_104168 | TRAP-type C4-dicarboxylate transport system, substrate-binding protein. | acetyl-CoA synthetase. | 0.870 |
SEO37687.1 | SEO37812.1 | SAMN04490248_104165 | SAMN04490248_104169 | TRAP-type C4-dicarboxylate transport system, substrate-binding protein. | DNA-binding transcriptional regulator, IclR family. | 0.838 |
SEO37687.1 | SEO37843.1 | SAMN04490248_104165 | SAMN04490248_104170 | TRAP-type C4-dicarboxylate transport system, substrate-binding protein. | Uncharacterized domain 1-containing protein. | 0.844 |
SEO37687.1 | SEO37871.1 | SAMN04490248_104165 | SAMN04490248_104171 | TRAP-type C4-dicarboxylate transport system, substrate-binding protein. | CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family. | 0.454 |
SEO37758.1 | SEO37687.1 | SAMN04490248_104167 | SAMN04490248_104165 | N-terminal half of MaoC dehydratase. | TRAP-type C4-dicarboxylate transport system, substrate-binding protein. | 0.902 |
SEO37758.1 | SEO37786.1 | SAMN04490248_104167 | SAMN04490248_104168 | N-terminal half of MaoC dehydratase. | acetyl-CoA synthetase. | 0.930 |
SEO37758.1 | SEO37812.1 | SAMN04490248_104167 | SAMN04490248_104169 | N-terminal half of MaoC dehydratase. | DNA-binding transcriptional regulator, IclR family. | 0.868 |
SEO37758.1 | SEO37843.1 | SAMN04490248_104167 | SAMN04490248_104170 | N-terminal half of MaoC dehydratase. | Uncharacterized domain 1-containing protein. | 0.868 |
SEO37758.1 | SEO37871.1 | SAMN04490248_104167 | SAMN04490248_104171 | N-terminal half of MaoC dehydratase. | CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family. | 0.619 |
SEO37786.1 | SEO37687.1 | SAMN04490248_104168 | SAMN04490248_104165 | acetyl-CoA synthetase. | TRAP-type C4-dicarboxylate transport system, substrate-binding protein. | 0.870 |
SEO37786.1 | SEO37758.1 | SAMN04490248_104168 | SAMN04490248_104167 | acetyl-CoA synthetase. | N-terminal half of MaoC dehydratase. | 0.930 |
SEO37786.1 | SEO37812.1 | SAMN04490248_104168 | SAMN04490248_104169 | acetyl-CoA synthetase. | DNA-binding transcriptional regulator, IclR family. | 0.864 |
SEO37786.1 | SEO37843.1 | SAMN04490248_104168 | SAMN04490248_104170 | acetyl-CoA synthetase. | Uncharacterized domain 1-containing protein. | 0.865 |
SEO37786.1 | SEO37871.1 | SAMN04490248_104168 | SAMN04490248_104171 | acetyl-CoA synthetase. | CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family. | 0.579 |
SEO37786.1 | SEP14481.1 | SAMN04490248_104168 | SAMN04490248_12911 | acetyl-CoA synthetase. | (3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family. | 0.636 |
SEO37786.1 | sucC | SAMN04490248_104168 | SAMN04490248_1297 | acetyl-CoA synthetase. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.733 |
SEO37786.1 | sucD | SAMN04490248_104168 | SAMN04490248_1296 | acetyl-CoA synthetase. | succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.719 |
SEO37812.1 | SEO37687.1 | SAMN04490248_104169 | SAMN04490248_104165 | DNA-binding transcriptional regulator, IclR family. | TRAP-type C4-dicarboxylate transport system, substrate-binding protein. | 0.838 |
SEO37812.1 | SEO37758.1 | SAMN04490248_104169 | SAMN04490248_104167 | DNA-binding transcriptional regulator, IclR family. | N-terminal half of MaoC dehydratase. | 0.868 |
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