STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO38246.1SlyX protein. (64 aa)    
Predicted Functional Partners:
SEO75141.1
Hypothetical protein.
  
     0.720
SEO86340.1
Sulfotransferase family protein.
  
     0.711
SEO50191.1
Hypothetical protein.
  
     0.694
SEO38158.1
ATP phosphoribosyltransferase regulatory subunit.
 
     0.686
SEO69361.1
Protein RodZ, contains Xre-like HTH and DUF4115 domains.
  
     0.678
SEO15639.1
Hypothetical protein.
  
     0.673
SEO38146.1
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
       0.609
hisS
histidyl-tRNA synthetase.
       0.609
SEO03083.1
Membrane associated serine protease, rhomboid family.
  
     0.603
SEO83076.1
Hypothetical protein.
  
     0.560
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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