STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO44555.1Autotransporter secretion inner membrane protein TamB. (1258 aa)    
Predicted Functional Partners:
SEO44520.1
Autotransporter secretion outer membrane protein TamA.
 
   
 0.963
SEO44493.1
Esterase/lipase superfamily enzyme.
 
     0.529
SEO75893.1
Transglycosylase SLT domain-containing protein.
  
     0.500
SEO96542.1
Protein of unknown function.
  
     0.482
SEO44582.1
Tungstate transport system permease protein.
       0.480
SEO44606.1
Phosphate ABC transporter ATP-binding protein, PhoT family.
       0.480
SEO44644.1
Tungstate transport system substrate-binding protein.
       0.480
SEO70918.1
Hypothetical protein.
  
     0.449
SEO71321.1
Putative peptidoglycan binding domain-containing protein.
  
     0.442
SEO30184.1
Protein of unknown function.
  
     0.421
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.