STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO41547.1Isoquinoline 1-oxidoreductase, beta subunit. (747 aa)    
Predicted Functional Partners:
SEO41573.1
Isoquinoline 1-oxidoreductase, alpha subunit.
 0.999
SEO29895.1
Cytochrome c, mono-and diheme variants.
 
 
 0.943
SEP18224.1
Cytochrome c, mono-and diheme variants.
 
 
 0.943
SEP00832.1
Carbon-monoxide dehydrogenase small subunit.
 
  0.815
SEP04293.1
Carbon-monoxide dehydrogenase small subunit.
 
  0.796
SEP00870.1
Xanthine dehydrogenase accessory factor.
 
 
  0.795
SEP16681.1
Carbon-monoxide dehydrogenase small subunit.
 
  0.778
SEO64587.1
Carbon-monoxide dehydrogenase small subunit.
 
  0.754
SEO67713.1
CTP:molybdopterin cytidylyltransferase MocA.
 
  
 0.734
SEO39196.1
Carbon-monoxide dehydrogenase small subunit.
 
  0.717
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.