STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO46008.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
SEP20939.1
AAA domain-containing protein.
  
    0.754
SEO45981.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
 
     0.728
SEP17872.1
Type I restriction enzyme, R subunit.
  
    0.634
SEP24271.1
Type I restriction enzyme, R subunit.
  
    0.634
SEP24283.1
Type I restriction enzyme, R subunit.
  
    0.634
SEO46034.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.556
fur
Manganese uptake regulator, Fur family; Belongs to the Fur family.
       0.555
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.