STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO46223.1Transcriptional regulator, BadM/Rrf2 family. (163 aa)    
Predicted Functional Partners:
SEO46252.1
Cysteine desulfurase.
 
 0.999
SEO27804.1
NifU homolog involved in Fe-S cluster formation.
  
  
 0.934
SEO46282.1
Iron-regulated ABC transporter membrane component SufB.
     
 0.892
SEP00599.1
Iron-binding apoprotein IscA; Belongs to the HesB/IscA family.
 
  
 0.838
SEO46374.1
Hypothetical protein.
     
 0.760
SEO46345.1
Fe-S cluster assembly protein SufD.
     
 0.754
SEO46404.1
Yip1 domain-containing protein.
     
 0.747
SEO46311.1
Fe-S cluster assembly ATP-binding protein.
     
 0.746
SEO46198.1
Hypothetical protein.
       0.704
SEO46173.1
Hypothetical protein.
       0.694
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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