STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO50724.1Phage tail tube protein, GTA-gp10. (108 aa)    
Predicted Functional Partners:
SEO50777.1
Phage tail tape measure protein, lambda family.
 
    0.971
SEO50699.1
Phage major tail protein, TP901-1 family.
 
    0.968
SEO50746.1
Phage conserved hypothetical protein.
 
    0.963
SEO50858.1
Putative phage cell wall peptidase, NlpC/P60 family.
 
    0.962
SEO50806.1
TIGR02217 family protein.
 
     0.961
SEO50831.1
Phage conserved hypothetical protein BR0599.
 
     0.961
SEO50622.1
Phage conserved hypothetical protein, phiE125 gp8 family.
 
    0.956
SEO50632.1
Head-tail adaptor.
 
     0.955
SEO50666.1
Protein of unknown function.
 
     0.955
SEO50897.1
Putative phage tail protein.
 
     0.950
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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