STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO50929.1Hypothetical protein. (374 aa)    
Predicted Functional Partners:
SEO50806.1
TIGR02217 family protein.
 
 
   0.998
SEO50831.1
Phage conserved hypothetical protein BR0599.
 
   0.998
SEO50699.1
Phage major tail protein, TP901-1 family.
 
 
   0.992
SEO50897.1
Putative phage tail protein.
     0.991
SEO50622.1
Phage conserved hypothetical protein, phiE125 gp8 family.
 
 
   0.988
SEO50666.1
Protein of unknown function.
 
 
   0.988
SEO50451.1
Phage portal protein, HK97 family.
 
   0.987
SEO50592.1
Phage major capsid protein, HK97 family.
 
   0.982
SEO50632.1
Head-tail adaptor.
 
 
   0.981
SEO50470.1
Phage portal protein, HK97 family.
 
 
   0.969
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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