Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEO03741.1 | SEO62123.1 | SAMN04490248_101117 | SAMN04490248_10819 | 2-dehydro-3-deoxygalactonokinase. | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.891 |
SEO38967.1 | SEO62123.1 | SAMN04490248_104211 | SAMN04490248_10819 | Altronate hydrolase. | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.796 |
SEO38967.1 | SEO81435.1 | SAMN04490248_104211 | SAMN04490248_11317 | Altronate hydrolase. | 2,4-dihydroxyhept-2-enedioate aldolase; Belongs to the HpcH/HpaI aldolase family. | 0.848 |
SEO62057.1 | SEO62087.1 | SAMN04490248_10817 | SAMN04490248_10818 | ATP-dependent helicase Lhr and Lhr-like helicase. | Transcriptional regulator, ArsR family. | 0.773 |
SEO62057.1 | SEO62123.1 | SAMN04490248_10817 | SAMN04490248_10819 | ATP-dependent helicase Lhr and Lhr-like helicase. | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.586 |
SEO62057.1 | SEO62154.1 | SAMN04490248_10817 | SAMN04490248_10820 | ATP-dependent helicase Lhr and Lhr-like helicase. | Zn-dependent alcohol dehydrogenase. | 0.474 |
SEO62087.1 | SEO62057.1 | SAMN04490248_10818 | SAMN04490248_10817 | Transcriptional regulator, ArsR family. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.773 |
SEO62087.1 | SEO62123.1 | SAMN04490248_10818 | SAMN04490248_10819 | Transcriptional regulator, ArsR family. | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.586 |
SEO62087.1 | SEO62154.1 | SAMN04490248_10818 | SAMN04490248_10820 | Transcriptional regulator, ArsR family. | Zn-dependent alcohol dehydrogenase. | 0.474 |
SEO62123.1 | SEO03741.1 | SAMN04490248_10819 | SAMN04490248_101117 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 2-dehydro-3-deoxygalactonokinase. | 0.891 |
SEO62123.1 | SEO38967.1 | SAMN04490248_10819 | SAMN04490248_104211 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Altronate hydrolase. | 0.796 |
SEO62123.1 | SEO62057.1 | SAMN04490248_10819 | SAMN04490248_10817 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.586 |
SEO62123.1 | SEO62087.1 | SAMN04490248_10819 | SAMN04490248_10818 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Transcriptional regulator, ArsR family. | 0.586 |
SEO62123.1 | SEO62154.1 | SAMN04490248_10819 | SAMN04490248_10820 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Zn-dependent alcohol dehydrogenase. | 0.763 |
SEO62123.1 | SEO63300.1 | SAMN04490248_10819 | SAMN04490248_10862 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | ABC transporter, phosphonate, substrate-binding protein. | 0.526 |
SEO62123.1 | SEO81435.1 | SAMN04490248_10819 | SAMN04490248_11317 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 2,4-dihydroxyhept-2-enedioate aldolase; Belongs to the HpcH/HpaI aldolase family. | 0.558 |
SEO62123.1 | SEO93084.1 | SAMN04490248_10819 | SAMN04490248_11673 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Fatty acid desaturase. | 0.604 |
SEO62123.1 | SEP11317.1 | SAMN04490248_10819 | SAMN04490248_1269 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family. | 0.568 |
SEO62123.1 | lcdH | SAMN04490248_10819 | SAMN04490248_11670 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. | 0.577 |
SEO62154.1 | SEO62057.1 | SAMN04490248_10820 | SAMN04490248_10817 | Zn-dependent alcohol dehydrogenase. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.474 |
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