STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO72063.1Transcriptional regulator, BadM/Rrf2 family. (158 aa)    
Predicted Functional Partners:
SEO46252.1
Cysteine desulfurase.
  
 
 0.744
SEP24222.1
Reductive dehalogenase.
  
  
 0.543
SEO72036.1
NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator.
  
    0.542
nosZ
Nitrous oxide reductase apoprotein; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
     
 0.539
SEO71993.1
Nitrous oxidase accessory protein.
     
 0.512
SEO71923.1
Copper chaperone NosL.
     
 0.511
SEO71943.1
Cu-processing system permease protein.
       0.511
SEO71893.1
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
       0.505
SEO71968.1
Cu-processing system ATP-binding protein.
       0.505
SEO27804.1
NifU homolog involved in Fe-S cluster formation.
  
  
 0.473
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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