STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO79439.1Hypothetical protein. (246 aa)    
Predicted Functional Partners:
SEO79410.1
Ferredoxin, 2Fe-2S.
       0.802
SEO79393.1
Putative peptidoglycan binding domain-containing protein.
 
     0.751
SEO34546.1
Protein of unknown function.
  
     0.501
SEP24222.1
Reductive dehalogenase.
 
     0.458
SEO83076.1
Hypothetical protein.
  
     0.427
SEO34275.1
Chloride channel protein, CIC family.
  
     0.410
SEO15940.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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