STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO82305.1acyl-CoA thioesterase-1. (224 aa)    
Predicted Functional Partners:
SEO82357.1
Putative ABC transport system permease protein.
 
     0.938
SEO82332.1
Putative ABC transport system ATP-binding protein.
 
     0.924
SEO50622.1
Phage conserved hypothetical protein, phiE125 gp8 family.
  
 0.918
SEO28573.1
Hypothetical protein.
   
 0.908
SEO90327.1
Hypothetical protein.
   
 0.908
SEP03022.1
Hypothetical protein.
   
 0.908
SEO04048.1
Right handed beta helix region.
  
 0.706
SEO07998.1
Arylsulfatase A.
    
  0.689
SEO53515.1
beta-N-acetylhexosaminidase.
    
 0.569
SEO93327.1
Carboxymethylenebutenolidase.
  
  
 0.512
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.