STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO85359.1Putative transposase. (255 aa)    
Predicted Functional Partners:
SEO85402.1
Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.
     0.993
SEO36825.1
PAS domain S-box-containing protein.
   
 0.790
SEO19106.1
PAS domain S-box-containing protein.
   
 0.780
SEO97606.1
PAS domain S-box-containing protein.
   
 0.780
SEP03272.1
Phage integrase, N-terminal SAM-like domain.
 
     0.779
SEO57605.1
Hypothetical protein.
   
 0.755
cysC
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
   
 
 0.725
SEO30414.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
     
 0.527
SEO35852.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
     
 0.527
SEO71582.1
Response regulator receiver domain-containing protein.
    
 0.514
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.