STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO88583.1Protein of unknown function. (58 aa)    
Predicted Functional Partners:
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.856
SEO88559.1
Ribbon-helix-helix domain-containing protein.
       0.856
SEO88620.1
Hypothetical protein.
       0.490
SEO26060.1
Glycosyl transferase family 2.
  
     0.482
SEO26434.1
Hypothetical protein.
  
     0.468
SEO46374.1
Hypothetical protein.
  
     0.450
SEP13393.1
AAA domain-containing protein.
  
     0.441
SEP10533.1
Universal stress protein family protein.
  
     0.414
SEO95963.1
Hypothetical protein.
  
     0.408
SEP09417.1
Sulfotransferase family protein.
  
     0.403
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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