STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO88875.1Hypothetical protein. (146 aa)    
Predicted Functional Partners:
SEO88894.1
Nudix-type nucleoside diphosphatase, YffH/AdpP family.
       0.856
SEO88954.1
Ala-tRNA(Pro) hydrolase.
       0.846
SEO88912.1
Cysteine synthase A.
       0.808
SEO88856.1
Cyclopropane-fatty-acyl-phospholipid synthase.
       0.802
SEO88937.1
Small-conductance mechanosensitive channel.
       0.758
SEO36018.1
TadE-like protein.
  
     0.752
SEO34546.1
Protein of unknown function.
  
     0.742
SEO35992.1
TadE-like protein.
  
    0.725
SEO35965.1
Flp pilus assembly protein TadG.
  
    0.700
SEP06876.1
Hypothetical protein.
  
     0.683
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.