STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO89454.1Hypothetical protein. (220 aa)    
Predicted Functional Partners:
SEO89433.1
AAA domain-containing protein.
     0.982
SEO89490.1
Helicase conserved C-terminal domain-containing protein.
 
     0.954
SEO89413.1
Hypothetical protein.
 
     0.942
SEO89547.1
AAA domain-containing protein.
     0.920
SEO89376.1
Helix-turn-helix domain-containing protein.
 
     0.899
SEO89526.1
Hypothetical protein.
 
     0.876
SEO89567.1
Hypothetical protein.
 
     0.792
SEO89607.1
Hypothetical protein.
 
     0.782
SEO89854.1
Hypothetical protein.
  
     0.757
SEO89649.1
DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.748
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.