STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO88541.1Cysteine desulfuration protein SufE. (136 aa)    
Predicted Functional Partners:
SEO46434.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 0.996
SEO88840.1
Cysteine desulfurase family protein, VC1184 subfamily.
 0.954
SEO72991.1
Selenocysteine lyase/Cysteine desulfurase.
 
 0.924
SEO46282.1
Iron-regulated ABC transporter membrane component SufB.
 
 
 0.882
SEO46311.1
Fe-S cluster assembly ATP-binding protein.
 
   0.859
SEO46345.1
Fe-S cluster assembly protein SufD.
 
 
 0.859
SEP00580.1
FeS assembly SUF system protein.
     0.844
SEO17304.1
Selenophosphate synthase.
     
 0.808
SEO88525.1
Hypothetical protein.
       0.717
SEP24222.1
Reductive dehalogenase.
     
 0.480
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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