STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO90245.1Phage tail tape measure protein, lambda family. (803 aa)    
Predicted Functional Partners:
SEO89339.1
Peptidase S24-like.
   
    0.824
SEO89490.1
Helicase conserved C-terminal domain-containing protein.
   
    0.823
SEO90148.1
Hypothetical protein.
 
     0.789
SEP02830.1
Hypothetical protein.
 
     0.789
SEO90165.1
Hypothetical protein.
 
     0.788
SEP02847.1
Hypothetical protein.
 
     0.788
SEO90110.1
Hypothetical protein.
 
     0.787
SEP02795.1
Hypothetical protein.
 
     0.787
SEO90276.1
Hypothetical protein.
       0.780
SEO90055.1
Hypothetical protein.
 
     0.775
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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