STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO98224.1DNA-binding transcriptional regulator, MarR family. (159 aa)    
Predicted Functional Partners:
SEO98245.1
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
     0.982
SEO98200.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
  0.963
SEO98285.1
2-aminobenzoate-CoA ligase.
 
     0.939
SEO98176.1
anthraniloyl-CoA monooxygenase.
 
  
 0.922
SEO98270.1
acyl-CoA dehydrogenase.
 
  
  0.897
SEO98436.1
4-hydroxybenzoyl-CoA thioesterase.
 
     0.879
SEO98460.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
     0.848
SEO98309.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
     0.640
kynA
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
 
     0.494
SEO98380.1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.
 
     0.438
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.