STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP02723.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
SEP02738.1
Hypothetical protein.
 
     0.950
SEP02608.1
Hypothetical protein.
 
     0.859
SEP02708.1
Phage major capsid protein E.
 
     0.827
SEP02573.1
Protein of unknown function.
 
     0.802
SEP02627.1
Phage terminase, large subunit GpA.
 
     0.790
SEO90055.1
Hypothetical protein.
 
     0.789
SEO90110.1
Hypothetical protein.
 
     0.789
SEP02795.1
Hypothetical protein.
 
     0.789
SEO90148.1
Hypothetical protein.
 
     0.787
SEP02830.1
Hypothetical protein.
 
     0.787
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.