STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP12441.1Putative hemolysin. (259 aa)    
Predicted Functional Partners:
SEP12420.1
Lyso-ornithine lipid acyltransferase.
 
  
 0.985
SEP12462.1
Protein of unknown function.
 
     0.748
SEP12471.1
Histidine phosphotransferase ChpT.
       0.629
SEO25825.1
Hypothetical protein.
  
     0.517
SEO77678.1
Molybdopterin synthase subunit MoaD.
  
     0.457
rpsB
SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.
       0.456
SEO74723.1
Thiol-disulfide interchange protein, contains DsbC and DsbD domains.
  
     0.405
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.