Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEO03897.1 | SEO56678.1 | SAMN04490248_101122 | SAMN04490248_10711 | LAO/AO transport system kinase. | methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase. | 0.795 |
SEO03897.1 | SEP01324.1 | SAMN04490248_101122 | SAMN04490248_11973 | LAO/AO transport system kinase. | methylmalonyl-CoA mutase. | 0.998 |
SEO03897.1 | SEP14750.1 | SAMN04490248_101122 | SAMN04490248_12926 | LAO/AO transport system kinase. | (R)-ethylmalonyl-CoA mutase. | 0.997 |
SEO56678.1 | SEO03897.1 | SAMN04490248_10711 | SAMN04490248_101122 | methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase. | LAO/AO transport system kinase. | 0.795 |
SEO56678.1 | SEO64635.1 | SAMN04490248_10711 | SAMN04490248_108116 | methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase. | Indolepyruvate ferredoxin oxidoreductase. | 0.435 |
SEO56678.1 | SEO95600.1 | SAMN04490248_10711 | SAMN04490248_11742 | methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase. | Indolepyruvate ferredoxin oxidoreductase. | 0.435 |
SEO56678.1 | SEP01324.1 | SAMN04490248_10711 | SAMN04490248_11973 | methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase. | methylmalonyl-CoA mutase. | 0.993 |
SEO56678.1 | SEP14750.1 | SAMN04490248_10711 | SAMN04490248_12926 | methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase. | (R)-ethylmalonyl-CoA mutase. | 0.982 |
SEO56678.1 | SEP14784.1 | SAMN04490248_10711 | SAMN04490248_12928 | methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase. | crotonyl-CoA carboxylase/reductase. | 0.911 |
SEO64635.1 | SEO56678.1 | SAMN04490248_108116 | SAMN04490248_10711 | Indolepyruvate ferredoxin oxidoreductase. | methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase. | 0.435 |
SEO64635.1 | SEO95600.1 | SAMN04490248_108116 | SAMN04490248_11742 | Indolepyruvate ferredoxin oxidoreductase. | Indolepyruvate ferredoxin oxidoreductase. | 0.991 |
SEO64635.1 | SEP01324.1 | SAMN04490248_108116 | SAMN04490248_11973 | Indolepyruvate ferredoxin oxidoreductase. | methylmalonyl-CoA mutase. | 0.906 |
SEO64635.1 | SEP07709.1 | SAMN04490248_108116 | SAMN04490248_12313 | Indolepyruvate ferredoxin oxidoreductase. | Acetyl-CoA hydrolase/transferase C-terminal domain-containing protein. | 0.813 |
SEO64635.1 | SEP14750.1 | SAMN04490248_108116 | SAMN04490248_12926 | Indolepyruvate ferredoxin oxidoreductase. | (R)-ethylmalonyl-CoA mutase. | 0.906 |
SEO64635.1 | SEP15320.1 | SAMN04490248_108116 | SAMN04490248_1302 | Indolepyruvate ferredoxin oxidoreductase. | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.796 |
SEO64635.1 | sucC | SAMN04490248_108116 | SAMN04490248_1297 | Indolepyruvate ferredoxin oxidoreductase. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.841 |
SEO64635.1 | sucD | SAMN04490248_108116 | SAMN04490248_1296 | Indolepyruvate ferredoxin oxidoreductase. | succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.876 |
SEO95600.1 | SEO56678.1 | SAMN04490248_11742 | SAMN04490248_10711 | Indolepyruvate ferredoxin oxidoreductase. | methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase. | 0.435 |
SEO95600.1 | SEO64635.1 | SAMN04490248_11742 | SAMN04490248_108116 | Indolepyruvate ferredoxin oxidoreductase. | Indolepyruvate ferredoxin oxidoreductase. | 0.991 |
SEO95600.1 | SEP01324.1 | SAMN04490248_11742 | SAMN04490248_11973 | Indolepyruvate ferredoxin oxidoreductase. | methylmalonyl-CoA mutase. | 0.906 |
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