STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP18720.1Pilus assembly protein CpaF. (490 aa)    
Predicted Functional Partners:
SEP18702.1
Tight adherence protein B.
 
  
 0.974
SEP18691.1
Tight adherence protein C.
 
  
 0.966
SEP18742.1
Pilus assembly protein CpaE.
 
  
 0.947
SEP18758.1
Pilus assembly protein CpaB.
 
  
 0.932
SEO79773.1
Tight adherence protein B.
 
  
 0.912
SEP06944.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
  
 0.900
SEO79752.1
Type II secretion system protein F (GspF).
 
  
 0.891
SEP06924.1
Pilus assembly protein CpaB.
 
  
 0.847
SEO79827.1
Pilus assembly protein CpaE.
 
  
 0.817
SEP18771.1
Pilus assembly protein Flp/PilA.
 
  
 0.687
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.