STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP21336.1L,D-transpeptidase catalytic domain. (228 aa)    
Predicted Functional Partners:
SEP21296.1
Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).
 
     0.872
SEP21309.1
Cytochrome C oxidase, cbb3-type, subunit III.
 
     0.855
SEP21322.1
Protein-disulfide isomerase.
 
     0.804
SEP22856.1
Hypothetical protein.
  
     0.771
SEP21258.1
Cytochrome C oxidase, cbb3-type, subunit III.
 
     0.700
SEP22843.1
Multicopper oxidase.
  
     0.655
SEP21284.1
Uncharacterized copper-binding protein, cupredoxin-like subfamily.
       0.581
SEP21270.1
Hypothetical protein.
       0.566
SEP21196.1
EF hand.
  
     0.481
SEP21220.1
Signal transduction histidine kinase.
  
     0.461
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.