STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP22258.1TRAP transporter, DctM subunit. (431 aa)    
Predicted Functional Partners:
SEP22272.1
TRAP-type C4-dicarboxylate transport system, small permease component.
     0.917
SEP22287.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.908
SEO37556.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.847
SEO36796.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.840
SEO41981.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.791
SEO37536.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.777
aroQ-2
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.773
SEO17206.1
C4-dicarboxylate-binding protein DctP.
  
    0.762
SEO96179.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.754
SEP22300.1
4-hydroxyphenylpyruvate dioxygenase.
 
     0.612
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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