STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000341105_05930Unannotated protein. (400 aa)    
Predicted Functional Partners:
GCA_000341105_05929
Unannotated protein.
 0.999
GCA_000341105_02579
Unannotated protein.
   
 0.959
GCA_000341105_00224
Unannotated protein.
   
  0.954
GCA_000341105_02729
Unannotated protein.
 0.943
GCA_000341105_05960
Unannotated protein.
   
 0.936
GCA_000341105_03716
Unannotated protein.
   
 0.929
GCA_000341105_02735
Unannotated protein.
  
  
 
0.916
GCA_000341105_03721
Unannotated protein.
   
  0.912
GCA_000341105_01136
Unannotated protein.
  
  
 
0.911
GCA_000341105_01387
Unannotated protein.
  
  
 
0.909
Your Current Organism:
Nocardiopsis potens
NCBI taxonomy Id: 570268
Other names: N. potens DSM 45234, Nocardiopsis potens DSM 45234, Nocardiopsis potens IMMIB L-21, Nocardiopsis sp. IMMIB L-21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.