STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speDAdenosylmethionine decarboxylase. (307 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
  
 0.968
speB
Agmatinase; Belongs to the arginase family.
  
  
 0.841
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
     
 0.807
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
   
 
 0.779
AMO55233.1
Zinc finger C2H2-type domain-containing protein.
  
     0.533
AMO55232.1
Zinc finger C2H2-type domain-containing protein.
  
     0.523
AMO55234.1
Zinc finger C2H2-type domain-containing protein.
  
     0.523
AMO55235.1
Zinc finger C2H2-type domain-containing protein.
  
     0.500
AMO58570.1
Porin.
  
     0.485
nsdHL
3-beta hydroxysteroid dehydrogenase/isomerase.
  
 
  0.457
Your Current Organism:
Endozoicomonas montiporae
NCBI taxonomy Id: 570277
Other names: E. montiporae CL-33, Endozoicomonas montiporae CL-33, Endozoicomonas montiporae str. CL-33, Endozoicomonas montiporae strain CL-33, Endozoicomonas sp. CL-33
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