Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMO56991.1 | hepA | EZMO1_2952 | EZMO1_0340 | Ankyrin repeat protein. | Superfamily II DNA/RNA helicase. | 0.923 |
AMO56991.1 | hrpB | EZMO1_2952 | EZMO1_0921 | Ankyrin repeat protein. | ATP-dependent helicase HrpB. | 0.928 |
AMO56991.1 | ppiB | EZMO1_2952 | EZMO1_2173 | Ankyrin repeat protein. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.509 |
hepA | AMO56991.1 | EZMO1_0340 | EZMO1_2952 | Superfamily II DNA/RNA helicase. | Ankyrin repeat protein. | 0.923 |
hepA | hrpB | EZMO1_0340 | EZMO1_0921 | Superfamily II DNA/RNA helicase. | ATP-dependent helicase HrpB. | 0.901 |
hepA | ppiB | EZMO1_0340 | EZMO1_2173 | Superfamily II DNA/RNA helicase. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.952 |
hepA | rnd | EZMO1_0340 | EZMO1_3595 | Superfamily II DNA/RNA helicase. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.642 |
hepA | rs1 | EZMO1_0340 | EZMO1_2730 | Superfamily II DNA/RNA helicase. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.721 |
hepA | rs11 | EZMO1_0340 | EZMO1_4562 | Superfamily II DNA/RNA helicase. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.699 |
hepA | rs4 | EZMO1_0340 | EZMO1_4561 | Superfamily II DNA/RNA helicase. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.754 |
hepA | rs5 | EZMO1_0340 | EZMO1_4568 | Superfamily II DNA/RNA helicase. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.728 |
hrpB | AMO56991.1 | EZMO1_0921 | EZMO1_2952 | ATP-dependent helicase HrpB. | Ankyrin repeat protein. | 0.928 |
hrpB | hepA | EZMO1_0921 | EZMO1_0340 | ATP-dependent helicase HrpB. | Superfamily II DNA/RNA helicase. | 0.901 |
hrpB | ppiB | EZMO1_0921 | EZMO1_2173 | ATP-dependent helicase HrpB. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.724 |
hrpB | rfbD | EZMO1_0921 | EZMO1_0922 | ATP-dependent helicase HrpB. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. | 0.773 |
hrpB | rnd | EZMO1_0921 | EZMO1_3595 | ATP-dependent helicase HrpB. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.882 |
hrpB | rph | EZMO1_0921 | EZMO1_0155 | ATP-dependent helicase HrpB. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.784 |
hrpB | rs1 | EZMO1_0921 | EZMO1_2730 | ATP-dependent helicase HrpB. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.918 |
hrpB | rs11 | EZMO1_0921 | EZMO1_4562 | ATP-dependent helicase HrpB. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.891 |
hrpB | rs4 | EZMO1_0921 | EZMO1_4561 | ATP-dependent helicase HrpB. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.920 |
page 1 of 4