STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW35713.1TonB-dependent Receptor Plug Domain. (476 aa)    
Predicted Functional Partners:
SCW35728.1
TonB dependent receptor.
     0.985
SCW69595.1
Outer membrane protein OmpA.
     
 0.696
SCW85139.1
Outer membrane protein OmpA.
     
 0.696
SCW94977.1
Iron complex outermembrane recepter protein.
  
 
 0.695
SCW35364.1
Vitamin B12 transporter.
 
  
 0.656
SCW94420.1
TonB-dependent Receptor Plug Domain.
  
 
 0.656
SCW53442.1
Iron complex outermembrane recepter protein.
  
 
 0.655
SCW66640.1
Iron complex outermembrane recepter protein.
  
 
 0.654
SCW35156.1
Iron complex outermembrane recepter protein.
  
 
 0.649
SCW66823.1
Iron complex outermembrane recepter protein.
  
 
 0.647
Your Current Organism:
Sphingobium faniae
NCBI taxonomy Id: 570446
Other names: CGMCC 1.7749, DSM 21829, S. faniae, Sphingobium faniae Guo et al. 2010, Sphingobium sp. JZ-2, strain JZ-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.