STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW53724.1Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain. (296 aa)    
Predicted Functional Partners:
SCW53735.1
Arylsulfatase.
 
 
   0.973
SCW53713.1
Arylsulfatase A.
 
 
   0.954
SCW61950.1
Arylsulfatase.
 
 
   0.887
SCW94984.1
Arylsulfatase A.
 
 
   0.881
SCW94427.1
Sulfatase.
 
 
   0.877
SCW53701.1
Iron complex outermembrane recepter protein.
       0.623
SCW37792.1
Ergothioneine biosynthesis protein EgtB.
 
 
 0.589
SCW87547.1
Adenylate/guanylate cyclase.
 
  
  0.552
SCW37778.1
Dimethylhistidine N-methyltransferase.
  
 
 0.528
SCW53745.1
Cation diffusion facilitator family transporter.
       0.508
Your Current Organism:
Sphingobium faniae
NCBI taxonomy Id: 570446
Other names: CGMCC 1.7749, DSM 21829, S. faniae, Sphingobium faniae Guo et al. 2010, Sphingobium sp. JZ-2, strain JZ-2
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