STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW56908.1Major capsid protein, N4-gp56 family. (362 aa)    
Predicted Functional Partners:
SCW56881.1
Hypothetical protein.
 
   
 0.878
SCW56969.1
Hypothetical protein.
       0.764
SCW56926.1
Hypothetical protein.
       0.761
SCW56940.1
Hypothetical protein.
       0.757
SCW56957.1
Hypothetical protein.
       0.757
SCW56985.1
Chaperone of endosialidase.
       0.757
SCW57000.1
Hypothetical protein.
       0.757
SCW57055.1
Hypothetical protein.
       0.468
SCW57015.1
Hypothetical protein.
       0.456
SCW57028.1
Hypothetical protein.
       0.456
Your Current Organism:
Sphingobium faniae
NCBI taxonomy Id: 570446
Other names: CGMCC 1.7749, DSM 21829, S. faniae, Sphingobium faniae Guo et al. 2010, Sphingobium sp. JZ-2, strain JZ-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.