Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCW67605.1 | SCW67615.1 | SAMN02927924_02041 | SAMN02927924_02042 | Hypothetical protein. | Glycine zipper 2TM domain-containing protein. | 0.585 |
SCW67615.1 | SCW67605.1 | SAMN02927924_02042 | SAMN02927924_02041 | Glycine zipper 2TM domain-containing protein. | Hypothetical protein. | 0.585 |
SCW67615.1 | SCW69595.1 | SAMN02927924_02042 | SAMN02927924_02222 | Glycine zipper 2TM domain-containing protein. | Outer membrane protein OmpA. | 0.555 |
SCW67615.1 | SCW85139.1 | SAMN02927924_02042 | SAMN02927924_03373 | Glycine zipper 2TM domain-containing protein. | Outer membrane protein OmpA. | 0.555 |
SCW67615.1 | bamA | SAMN02927924_02042 | SAMN02927924_02037 | Glycine zipper 2TM domain-containing protein. | Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.546 |
SCW67615.1 | ihfA | SAMN02927924_02042 | SAMN02927924_02381 | Glycine zipper 2TM domain-containing protein. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.424 |
SCW69595.1 | SCW67615.1 | SAMN02927924_02222 | SAMN02927924_02042 | Outer membrane protein OmpA. | Glycine zipper 2TM domain-containing protein. | 0.555 |
SCW69595.1 | SCW85139.1 | SAMN02927924_02222 | SAMN02927924_03373 | Outer membrane protein OmpA. | Outer membrane protein OmpA. | 0.983 |
SCW69595.1 | bamA | SAMN02927924_02222 | SAMN02927924_02037 | Outer membrane protein OmpA. | Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.889 |
SCW85139.1 | SCW67615.1 | SAMN02927924_03373 | SAMN02927924_02042 | Outer membrane protein OmpA. | Glycine zipper 2TM domain-containing protein. | 0.555 |
SCW85139.1 | SCW69595.1 | SAMN02927924_03373 | SAMN02927924_02222 | Outer membrane protein OmpA. | Outer membrane protein OmpA. | 0.983 |
SCW85139.1 | bamA | SAMN02927924_03373 | SAMN02927924_02037 | Outer membrane protein OmpA. | Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.780 |
bamA | SCW67615.1 | SAMN02927924_02037 | SAMN02927924_02042 | Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Glycine zipper 2TM domain-containing protein. | 0.546 |
bamA | SCW69595.1 | SAMN02927924_02037 | SAMN02927924_02222 | Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Outer membrane protein OmpA. | 0.889 |
bamA | SCW85139.1 | SAMN02927924_02037 | SAMN02927924_03373 | Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Outer membrane protein OmpA. | 0.780 |
ihfA | SCW67615.1 | SAMN02927924_02381 | SAMN02927924_02042 | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Glycine zipper 2TM domain-containing protein. | 0.424 |