STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW69205.1Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (369 aa)    
Predicted Functional Partners:
SCW69199.1
Two component transcriptional regulator, LytTR family.
 
 0.986
SCW49785.1
Two component transcriptional regulator, LytTR family.
 
 0.933
SCW84628.1
Response regulator receiver domain-containing protein.
  
 0.702
SCW88724.1
PAS domain S-box-containing protein.
  
 
 0.660
SCW39933.1
His Kinase A (phospho-acceptor) domain-containing protein.
    
 0.536
SCW69215.1
Hypothetical protein.
       0.523
SCW66171.1
AraC-type DNA-binding protein.
  
  
  0.497
SCW73382.1
Transcriptional regulator, AraC family.
  
  
  0.445
Your Current Organism:
Sphingobium faniae
NCBI taxonomy Id: 570446
Other names: CGMCC 1.7749, DSM 21829, S. faniae, Sphingobium faniae Guo et al. 2010, Sphingobium sp. JZ-2, strain JZ-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.