STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW72953.1Muconolactone delta-isomerase. (96 aa)    
Predicted Functional Partners:
SCW72961.1
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.993
SCW95290.1
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.982
SCW72947.1
Catechol 1,2-dioxygenase.
 
  
 0.964
SCW72892.1
3-oxoadipate enol-lactonase.
 
 
 0.963
SCW72932.1
Benzoate/toluate 1,2-dioxygenase beta subunit.
 
  
 0.918
SCW72939.1
Benzoate/toluate 1,2-dioxygenase alpha subunit.
 
  
 0.908
SCW72926.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
 
  
 0.907
SCW95296.1
Catechol 1,2-dioxygenase.
 
  
 0.907
SCW95300.1
3-oxoadipate enol-lactonase.
 
 
 0.895
SCW72919.1
Dihydroxycyclohexadiene carboxylate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.884
Your Current Organism:
Sphingobium faniae
NCBI taxonomy Id: 570446
Other names: CGMCC 1.7749, DSM 21829, S. faniae, Sphingobium faniae Guo et al. 2010, Sphingobium sp. JZ-2, strain JZ-2
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