STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW79489.1Type IV secretion system protein VirD4. (661 aa)    
Predicted Functional Partners:
SCW79479.1
Ribbon-helix-helix protein, copG family.
 
     0.937
SCW85381.1
Type IV secretion system protein VirB10.
 
 
 
 0.763
SCW50234.1
Type IV secretion system protein VirB4.
 
    0.754
SCW79437.1
Type IV secretion system protein VirB4.
 
    0.753
SCW85425.1
Type IV secretion system protein VirB4.
 
    0.753
SCW83327.1
Type IV secretion system protein VirB4.
 
    0.741
SCW50191.1
Ribbon-helix-helix protein, copG family.
 
     0.731
SCW85453.1
Hypothetical protein.
 
     0.726
SCW79386.1
Type IV secretion system protein VirB10.
 
 
 
 0.719
SCW50284.1
Type IV secretion system protein VirB10.
 
 
 
 0.713
Your Current Organism:
Sphingobium faniae
NCBI taxonomy Id: 570446
Other names: CGMCC 1.7749, DSM 21829, S. faniae, Sphingobium faniae Guo et al. 2010, Sphingobium sp. JZ-2, strain JZ-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.