STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW83277.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (322 aa)    
Predicted Functional Partners:
SCW61014.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.745
SCW47613.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.692
SCW73186.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.640
SCW83291.1
Ribbon-helix-helix protein, copG family.
 
     0.594
SCW95503.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.532
SCW83271.1
Integral membrane protein.
 
     0.484
SCW83283.1
Type IV secretion system protein VirD4.
       0.472
SCW95435.1
LysR family transcriptional regulator, nod-box dependent transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.470
SCW89968.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.428
SCW83393.1
Hypothetical protein.
 
     0.423
Your Current Organism:
Sphingobium faniae
NCBI taxonomy Id: 570446
Other names: CGMCC 1.7749, DSM 21829, S. faniae, Sphingobium faniae Guo et al. 2010, Sphingobium sp. JZ-2, strain JZ-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.