STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW86433.1Type-F conjugative transfer system protein (TrbI_Ftype). (216 aa)    
Predicted Functional Partners:
SCW86429.1
Hypothetical protein.
       0.810
SCW86438.1
Conjugal transfer pilin signal peptidase TrbI.
       0.810
SCW86450.1
Hypothetical protein.
       0.810
SCW86387.1
Conjugal transfer pilus assembly protein TraL.
       0.789
SCW86411.1
Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
       0.789
SCW86418.1
Conjugal transfer pilus assembly protein TraV.
       0.789
SCW86423.1
Conjugal transfer ATP-binding protein TraC.
       0.789
SCW86443.1
Conjugal transfer pilus assembly protein TraW.
       0.789
SCW86456.1
Conjugal transfer pilus assembly protein TraU.
       0.789
SCW86392.1
Conjugal transfer pilus assembly protein TraE.
       0.788
Your Current Organism:
Sphingobium faniae
NCBI taxonomy Id: 570446
Other names: CGMCC 1.7749, DSM 21829, S. faniae, Sphingobium faniae Guo et al. 2010, Sphingobium sp. JZ-2, strain JZ-2
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.