STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW86500.1HipA-like C-terminal domain-containing protein. (110 aa)    
Predicted Functional Partners:
SCW95321.1
Putative transcriptional regulator.
   
 0.958
SCW93376.1
Toxin YhaV.
  
  
  0.694
SCW93369.1
Antitoxin PrlF.
  
  
  0.685
SCW92606.1
Zn-dependent peptidase ImmA, M78 family.
 
 
 0.636
SCW85339.1
Hypothetical protein.
  
     0.540
SCW77724.1
mRNA interferase RelE/StbE.
     
 0.520
SCW86611.1
Transcriptional regulator, y4mF family.
  
 
 0.512
SCW94175.1
mRNA interferase YafQ.
     
 0.510
SCW33591.1
mRNA interferase HigB.
     
 0.506
SCW80521.1
Protein of unknown function.
   
 
 0.503
Your Current Organism:
Sphingobium faniae
NCBI taxonomy Id: 570446
Other names: CGMCC 1.7749, DSM 21829, S. faniae, Sphingobium faniae Guo et al. 2010, Sphingobium sp. JZ-2, strain JZ-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.