STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW88738.1Two-component system, sensor histidine kinase RegB. (416 aa)    
Predicted Functional Partners:
SCW88733.1
Two-component system, response regulator RegA.
 
  
 0.993
SCW88724.1
PAS domain S-box-containing protein.
 
 
 0.930
SCW39933.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.753
SCW55018.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.739
SCW52592.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.728
SCW57477.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.715
SCW36294.1
Hypothetical protein.
   
 0.602
SCW52367.1
Two-component system, OmpR family, sensor histidine kinase ChvG.
   
 0.599
SCW76886.1
Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
   
    0.570
SCW94673.1
Two-component system, OmpR family, KDP operon response regulator KdpE.
 
 
 0.515
Your Current Organism:
Sphingobium faniae
NCBI taxonomy Id: 570446
Other names: CGMCC 1.7749, DSM 21829, S. faniae, Sphingobium faniae Guo et al. 2010, Sphingobium sp. JZ-2, strain JZ-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.