STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW93292.1type-IV secretion system protein TraC. (437 aa)    
Predicted Functional Partners:
SCW93326.1
Conjugal transfer pilus assembly protein TraU.
 
   
 0.949
SCW93315.1
Conjugal transfer pilus assembly protein TraW.
 
     0.947
SCW93310.1
Conjugal transfer pilin signal peptidase TrbI.
 
     0.944
SCW93331.1
Conjugal transfer pilus assembly protein TrbC.
 
     0.936
SCW93338.1
Conjugal transfer mating pair stabilization protein TraN.
 
     0.922
SCW93344.1
Conjugal transfer pilus assembly protein TraF.
 
     0.906
SCW93351.1
Conjugative transfer pilus assembly protein TraH.
 
     0.906
SCW93358.1
Conjugal transfer mating pair stabilization protein TraG.
 
     0.899
SCW86456.1
Conjugal transfer pilus assembly protein TraU.
 
   
 0.785
SCW86404.1
Conjugal transfer pilus assembly protein TraB.
 
   
 0.781
Your Current Organism:
Sphingobium faniae
NCBI taxonomy Id: 570446
Other names: CGMCC 1.7749, DSM 21829, S. faniae, Sphingobium faniae Guo et al. 2010, Sphingobium sp. JZ-2, strain JZ-2
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.