Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCW37446.1 | SCW95326.1 | SAMN02927924_00268 | SAMN02927924_04689 | Transcriptional regulator, CarD family. | Sigma-70, region 4. | 0.914 |
SCW37446.1 | rpoA | SAMN02927924_00268 | SAMN02927924_01228 | Transcriptional regulator, CarD family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.973 |
SCW37446.1 | rpoB | SAMN02927924_00268 | SAMN02927924_02144 | Transcriptional regulator, CarD family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.969 |
SCW37446.1 | rpoC | SAMN02927924_00268 | SAMN02927924_02143 | Transcriptional regulator, CarD family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.968 |
SCW37446.1 | rpoZ | SAMN02927924_00268 | SAMN02927924_01154 | Transcriptional regulator, CarD family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.973 |
SCW82111.1 | SCW95326.1 | SAMN02927924_03108 | SAMN02927924_04689 | AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase. | Sigma-70, region 4. | 0.921 |
SCW88007.1 | SCW95326.1 | SAMN02927924_03623 | SAMN02927924_04689 | CheY chemotaxis protein or a CheY-like REC (receiver) domain. | Sigma-70, region 4. | 0.705 |
SCW88007.1 | rpoA | SAMN02927924_03623 | SAMN02927924_01228 | CheY chemotaxis protein or a CheY-like REC (receiver) domain. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.758 |
SCW88007.1 | rpoB | SAMN02927924_03623 | SAMN02927924_02144 | CheY chemotaxis protein or a CheY-like REC (receiver) domain. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.958 |
SCW88007.1 | rpoC | SAMN02927924_03623 | SAMN02927924_02143 | CheY chemotaxis protein or a CheY-like REC (receiver) domain. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.959 |
SCW88007.1 | rpoZ | SAMN02927924_03623 | SAMN02927924_01154 | CheY chemotaxis protein or a CheY-like REC (receiver) domain. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.818 |
SCW89371.1 | SCW95326.1 | SAMN02927924_03774 | SAMN02927924_04689 | AraC-type DNA-binding protein. | Sigma-70, region 4. | 0.605 |
SCW89371.1 | rpoA | SAMN02927924_03774 | SAMN02927924_01228 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.625 |
SCW89371.1 | rpoB | SAMN02927924_03774 | SAMN02927924_02144 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.477 |
SCW89371.1 | rpoC | SAMN02927924_03774 | SAMN02927924_02143 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.424 |
SCW89989.1 | SCW95326.1 | SAMN02927924_03833 | SAMN02927924_04689 | GcrA cell cycle regulator. | Sigma-70, region 4. | 0.723 |
SCW95324.1 | SCW95326.1 | SAMN02927924_04688 | SAMN02927924_04689 | Site-specific DNA recombinase. | Sigma-70, region 4. | 0.778 |
SCW95326.1 | SCW37446.1 | SAMN02927924_04689 | SAMN02927924_00268 | Sigma-70, region 4. | Transcriptional regulator, CarD family. | 0.914 |
SCW95326.1 | SCW82111.1 | SAMN02927924_04689 | SAMN02927924_03108 | Sigma-70, region 4. | AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase. | 0.921 |
SCW95326.1 | SCW88007.1 | SAMN02927924_04689 | SAMN02927924_03623 | Sigma-70, region 4. | CheY chemotaxis protein or a CheY-like REC (receiver) domain. | 0.705 |
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