STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG16358.1DNA-binding transcriptional regulator, MarR family. (133 aa)    
Predicted Functional Partners:
SHG16392.1
Pimeloyl-ACP methyl ester carboxylesterase; Manually curated.
 
     0.777
SHG47897.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.760
SHG56307.1
AraC-type DNA-binding protein.
  
    0.759
SHG85849.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
  
     0.688
SHG85789.1
Acetolactate synthase large subunit; Belongs to the TPP enzyme family.
 
    0.659
SHG47921.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.627
SHG56222.1
Hypothetical protein.
  
     0.620
SHG84221.1
Hypothetical protein.
  
     0.617
SHG81783.1
Hypothetical protein.
  
    0.616
SHG53040.1
LytTr DNA-binding domain-containing protein.
  
     0.608
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.