Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG23338.1 | SHG33762.1 | SAMN04488116_0440 | SAMN04488116_1029 | Carbamoyl-phosphate synthase large subunit. | Dihydroorotase. | 0.892 |
SHG23338.1 | SHG50684.1 | SAMN04488116_0440 | SAMN04488116_1513 | Carbamoyl-phosphate synthase large subunit. | Dihydroorotase. | 0.984 |
SHG23338.1 | carA | SAMN04488116_0440 | SAMN04488116_2947 | Carbamoyl-phosphate synthase large subunit. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.999 |
SHG23338.1 | guaA | SAMN04488116_0440 | SAMN04488116_3011 | Carbamoyl-phosphate synthase large subunit. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.869 |
SHG23338.1 | guaB | SAMN04488116_0440 | SAMN04488116_0112 | Carbamoyl-phosphate synthase large subunit. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.607 |
SHG23338.1 | pyrB | SAMN04488116_0440 | SAMN04488116_3069 | Carbamoyl-phosphate synthase large subunit. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
SHG23338.1 | pyrD | SAMN04488116_0440 | SAMN04488116_0103 | Carbamoyl-phosphate synthase large subunit. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.975 |
SHG23338.1 | pyrE | SAMN04488116_0440 | SAMN04488116_3176 | Carbamoyl-phosphate synthase large subunit. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.940 |
SHG23338.1 | pyrF | SAMN04488116_0440 | SAMN04488116_0051 | Carbamoyl-phosphate synthase large subunit. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.935 |
SHG33762.1 | SHG23338.1 | SAMN04488116_1029 | SAMN04488116_0440 | Dihydroorotase. | Carbamoyl-phosphate synthase large subunit. | 0.892 |
SHG33762.1 | SHG50684.1 | SAMN04488116_1029 | SAMN04488116_1513 | Dihydroorotase. | Dihydroorotase. | 0.887 |
SHG33762.1 | carA | SAMN04488116_1029 | SAMN04488116_2947 | Dihydroorotase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.917 |
SHG33762.1 | guaA | SAMN04488116_1029 | SAMN04488116_3011 | Dihydroorotase. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.594 |
SHG33762.1 | pyrB | SAMN04488116_1029 | SAMN04488116_3069 | Dihydroorotase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
SHG33762.1 | pyrD | SAMN04488116_1029 | SAMN04488116_0103 | Dihydroorotase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.986 |
SHG33762.1 | pyrE | SAMN04488116_1029 | SAMN04488116_3176 | Dihydroorotase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.830 |
SHG33762.1 | pyrF | SAMN04488116_1029 | SAMN04488116_0051 | Dihydroorotase. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.791 |
SHG50684.1 | SHG23338.1 | SAMN04488116_1513 | SAMN04488116_0440 | Dihydroorotase. | Carbamoyl-phosphate synthase large subunit. | 0.984 |
SHG50684.1 | SHG33762.1 | SAMN04488116_1513 | SAMN04488116_1029 | Dihydroorotase. | Dihydroorotase. | 0.887 |
SHG50684.1 | carA | SAMN04488116_1513 | SAMN04488116_2947 | Dihydroorotase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.982 |
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